EFI - Training Resources: JMB Resources

This web resource is supported by a Research Resource from the National Institute of General Medical Sciences (R24GM141196-01).
The tools are available without charge or license to both academic and commercial users.
The new Taxonomy Tool and Filter by Taxonomy feature facilitate higher resolution analyses of focused regions of sequence-function space using UniProt IDs instead of UniRef90 clusters or UniRef90 clusters instead of UniRef50 clusters. The J Mol Biol article describing these is available on the JMB Resources training page.
SSNs for Taxonomy Categories: Taxonomy Tool and Filter by Taxonomy

As the UniProtKB database and the protein families identified by Pfam and InterPro continue to increase in size, analyses of sequence-function space in SSNs is increasingly difficult. We have developed the ability to generate SSNs from taxonomy categories, allowing higher resolution analyses of focused regions of sequence-function space using UniProt IDs instead of UniRef90 clusters or UniRef90 clusters instead of UniRef50 clusters.

An article has been published in the 2023 Computational Resources for Molecular Biology issue of Journal of Molecular Biology that describes the Taxonomy Tool and Filter by Taxonomy features that we have developed. The article includes examples of the use of both the Taxonomy Tool and Filter by Taxonomy with analyses of both the glycyl radical enzyme superfamily (GRE; IPR004184) and the radical SAM superfamily (RSS).

Please use the following to cite the EFI tools:

Nils Oberg, RĂ©mi Zallot, and John A. Gerlt, EFI-EST, EFI-GNT, and EFI-CGFP: Enzyme Function Initiative (EFI) Web Resource for Genomic Enzymology Tools. J Mol Biol 2023. https://doi.org/10.1016/j.jmb.2023.168018

Download the paper in PDF format.

Download the supplementary figures.

Download the supplementary tutorials.

We also provide access to the EFI-EST, EFI-GNT and EFI-CGFP jobs that were generated in the analyses described in the article.

GRE

GRE: UniRef90 SSN

ID Job Name Recent Activity
27106 IP91_IPR004184_UniRef90_NoFragments
1/26 03:14 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS240
1/27 04:45 AM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS240 full ssn.xgmml.zip
1/27 05:31 AM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS240 full ssn.xgmml.zip
1/30 05:09 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS240 full ssn.xgmml.zip
1/27 06:02 AM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS240 full ssn.xgmml.zip
1/27 05:11 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS90
2/1 01:41 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS90 full ssn.xgmml.zip
2/1 02:39 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS120
2/1 01:40 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS120 full ssn.xgmml.zip
2/1 02:38 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS150
2/1 01:40 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS150 full ssn.xgmml.zip
2/1 02:37 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS180
2/1 01:41 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS180 full ssn.xgmml.zip
2/1 02:32 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS210
2/1 01:41 PM
27106 IP91 IPR004184 UniRef90 NoFragments Minlen650 AS210 full ssn.xgmml.zip
2/1 02:36 PM

GRE: Families option of the Taxonomy Tool with transfer of UniRef90 cluster IDs to the Accession IDs option

ID Job Name Recent Activity
26146 IP91_IPR004184_NoFragments Bacteria UniRef90_NoFragments_IPR004184_Bacteria
11/7 12:35 PM
IP91_IPR004184_NoFragments_Bacteria_UniRef90_NoFragments_IPR004184_Bacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Bacteria_UniRef90_NoFragments_IPR004184_Bacteria_Minlen650_AS240
11/8 09:45 AM
26146 IP91_IPR004184_NoFragments Bacteria UniRef90_NoFragments_IPR004184_Bacteria
11/7 12:35 PM
IP91_IPR004184_NoFragments_Bacteria_UniRef90_NoFragments_IPR004184_Bacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Bacteria_UniRef90_NoFragments_IPR004184_Bacteria_Minlen650_AS240
11/8 09:45 AM
26147 IP91_IPR004184_NoFragments Actinobacteria UniRef90_NoFragments_IPR004184_Actinobacteria
11/7 12:05 PM
IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240
11/8 09:45 AM
26147 IP91_IPR004184_NoFragments Actinobacteria UniRef90_NoFragments_IPR004184_Actinobacteria
11/7 12:05 PM
IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240
11/8 09:45 AM
26148 IP91_IPR004184_NoFragments Bacteroidetes UniRef90_NoFragments_IPR004184_Bacteroidetes
11/7 12:05 PM
IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes
11/8 09:45 AM
IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes
11/8 09:45 AM
26148 IP91_IPR004184_NoFragments Bacteroidetes UniRef90_NoFragments_IPR004184_Bacteroidetes
11/7 12:05 PM
IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes
11/8 09:45 AM
IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes
11/8 09:45 AM
26149 IP91_IPR004184_NoFragments Firmicutes UniRef90_NoFragments_IPR004184_Firmicutes
11/7 12:15 PM
IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240
11/8 09:45 AM
26149 IP91_IPR004184_NoFragments Firmicutes UniRef90_NoFragments_IPR004184_Firmicutes
11/7 12:15 PM
IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240
11/8 09:45 AM
26150 IP91_IPR004184_NoFragments Proteobacteria UniRef90_NoFragments_IPR004184_Proteobacteria
11/7 12:05 PM
IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240
11/8 09:45 AM
26150 IP91_IPR004184_NoFragments Proteobacteria UniRef90_NoFragments_IPR004184_Proteobacteria
11/7 12:05 PM
IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240
11/8 09:45 AM
26151 IP91_IPR004184_NoFragments Eukaryota UniRef90_NoFragments_IPR004184_Fungi
11/7 12:00 PM
IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240
11/8 09:45 AM
26151 IP91_IPR004184_NoFragments Eukaryota UniRef90_NoFragments_IPR004184_Fungi
11/7 12:00 PM
IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240
11/8 09:45 AM
26152 IP91_IPR004184_NoFragments Archaea UniRef90_NoFragments_IPR004184_Archaea
11/7 12:05 PM
IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240
11/8 09:45 AM
26152 IP91_IPR004184_NoFragments Archaea UniRef90_NoFragments_IPR004184_Archaea
11/7 12:05 PM
IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240
11/8 09:45 AM

GRE: GNT from Families option of the Taxonomy Tool with transfer of UniRef90 cluster IDs to the Accession IDs option

ID Filename Date Completed
7671 26147_IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240_full_ssn.xgmml.zip
1/17 05:18 PM
7672 26148_IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes_full_ssn.xgmml.zip
1/17 05:19 PM
7673 26149_IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240_full_ssn.xgmml.zip
1/17 05:27 PM
7674 26150_IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240_full_ssn.xgmml.zip
1/17 05:27 PM
7675 26151_IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240_full_ssn.xgmml.zip
1/17 05:20 PM
7676 26152_IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240_full_ssn.xgmml.zip
1/17 05:20 PM
7677 26146_IP91_IPR004184_NoFragments_Bacteria_UniRef90_NoFragments_IPR004184_Bacteria_Minlen650_AS240_full_ssn.xgmml.zip
1/18 10:35 AM

GRE: CGFP from Families option of the Taxonomy Tool with transfer of UniRef90 cluster IDs to Accession IDs option

ID Filename Date Completed
834 26137_26123_IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 05:10 PM
26123_IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS240
2/2 05:25 PM
835 27071_26147_IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 02:50 PM
26147_IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240
2/1 03:05 PM
836 27072_26148_IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes_full_ssn_coloredssn.zip
1/31 02:50 PM
26148_IP91_IPR004184_NoFragments_Bacteroidetes_UniRef90_NoFragments_IPR004184_Bacteroidetes_Minlen650_AS240
2/1 03:05 PM
837 27073_26149_IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 03:36 PM
26149_IP91_IPR004184_NoFragments_Firmicutes_UniRef90_NoFragments_IPR004184_Firmicutes_Minlen650_AS240
2/1 11:32 PM
838 27074_26150_IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 03:31 PM
26150_IP91_IPR004184_NoFragments_Proteobacteria_UniRef90_NoFragments_IPR004184_Proteobacteria_Minlen650_AS240
2/1 10:19 PM
839 27075_26151_IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 02:40 PM
26151_IP91_IPR004184_NoFragments_Eukaryota_UniRef90_NoFragments_IPR004184_Fungi_Minlen650_AS240
2/1 07:50 PM
840 27076_26152_IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240_full_ssn_coloredssn.zip
1/31 02:42 PM
26152_IP91_IPR004184_NoFragments_Archaea_UniRef90_NoFragments_IPR004184_Archaea_Minlen650_AS240
2/1 10:45 PM

GRE: Families option, Filter by Taxonomy in the Analysis Step

ID Job Name Recent Activity
26123 IP91_IPR004184_UniRef90_NoFragments
11/6 07:25 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS90
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS120
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS150
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS180
11/7 10:25 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS210
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS240
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
;
11/7 10:30 AM
26123 IP91_IPR004184_UniRef90_NoFragments
11/6 07:25 PM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS90
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS120
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS150
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS180
11/7 10:25 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS210
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Minlen650_AS240
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
;
11/7 10:30 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
;
11/7 10:30 AM

GRE: Families option, Filter by Taxonomy in the Generate Step

ID Job Name Recent Activity
26129 IP91_IPR004184_UniRef90_NoFragments_Bacteria
11/7 11:50 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
11/8 09:45 AM
26129 IP91_IPR004184_UniRef90_NoFragments_Bacteria
11/7 11:50 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteria_Minlen650_AS240
11/8 09:45 AM
26130 IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/7 11:20 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/8 09:40 AM
26130 IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/7 11:20 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Actinobacteria
11/8 09:40 AM
26131 IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes
11/7 11:20 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
11/8 09:55 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
11/8 09:55 AM
26131 IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes
11/7 11:20 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
11/8 09:55 AM
IP91_IPR004184_UniRef90_NoFragments_Bacteroidetes_Minlen650_AS240
11/8 09:55 AM
26132 IP91_IPR004184_UniRef90_NoFragments_Firmicutes
11/7 11:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
11/8 09:45 AM
26132 IP91_IPR004184_UniRef90_NoFragments_Firmicutes
11/7 11:30 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
11/8 09:45 AM
IP91_IPR004184_UniRef90_NoFragments_Firmicutes_Minlen650_AS240
11/8 09:45 AM
26133 IP91_IPR004184_UniRef90_NoFragments_Proteobacteria
11/7 11:25 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
11/8 09:40 AM
26133 IP91_IPR004184_UniRef90_NoFragments_Proteobacteria
11/7 11:25 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Proteobacteria_Minlen650_AS240
11/8 09:40 AM
26134 IP91_IPR004184_UniRef90_NoFragments_Fungi
11/7 11:15 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
11/8 09:40 AM
26134 IP91_IPR004184_UniRef90_NoFragments_Fungi
11/7 11:15 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Fungi_Minlen650_AS240
11/8 09:40 AM
26135 IP91_IPR004184_UniRef90_NoFragments_Archaea
11/7 11:15 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
11/8 09:40 AM
26135 IP91_IPR004184_UniRef90_NoFragments_Archaea
11/7 11:15 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
11/8 09:40 AM
IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240
11/8 09:40 AM

RSS

RSS: Families option of the Taxonomy Tool with transfer of UniRef90 cluster IDs to the Accession IDs option

ID Job Name Recent Activity
26172 IP91_RSS_NoFragments Actinobacteria UniRef90_NoFragments_RSS_Actinobacteria
11/8 10:45 AM
IP91_RSS_NoFragments_Actinobacteria_UniRef90_NoFragments_RSS_Actinobacteria_Minlen140_AS11
11/10 06:35 PM
IP91_RSS_NoFragments_Actinobacteria_UniRef90_NoFragments_RSS_Actinobacteria_Minlen140_AS11
11/10 06:35 PM
26172 IP91_RSS_NoFragments Actinobacteria UniRef90_NoFragments_RSS_Actinobacteria
11/8 10:45 AM
IP91_RSS_NoFragments_Actinobacteria_UniRef90_NoFragments_RSS_Actinobacteria_Minlen140_AS11
11/10 06:35 PM
IP91_RSS_NoFragments_Actinobacteria_UniRef90_NoFragments_RSS_Actinobacteria_Minlen140_AS11
11/10 06:35 PM
26173 IP91_RSS_NoFragments Bacteroidetes UniRef90_NoFragments_RSS_Bacteroidetes
11/8 10:40 AM
IP91_RSS_NoFragments_Bacteroidetes_UniRef90_NoFragments_RSS_Bacteroidetes_Minlen140_AS11
11/10 05:30 PM
IP91_RSS_NoFragments_Bacteroidetes_UniRef90_NoFragments_RSS_Bacteroidetes_Minlen140_AS11
11/10 05:30 PM
26173 IP91_RSS_NoFragments Bacteroidetes UniRef90_NoFragments_RSS_Bacteroidetes
11/8 10:40 AM
IP91_RSS_NoFragments_Bacteroidetes_UniRef90_NoFragments_RSS_Bacteroidetes_Minlen140_AS11
11/10 05:30 PM
IP91_RSS_NoFragments_Bacteroidetes_UniRef90_NoFragments_RSS_Bacteroidetes_Minlen140_AS11
11/10 05:30 PM
26174 IP91_RSS_NoFragments Firmicutes UniRef90_NoFragments_RSS_Firmicutes
11/8 12:35 PM
IP91_RSS_NoFragments_Firmicutes_UniRef90_NoFragments_RSS_Firmicutes_Minlen140_AS11
11/10 07:30 PM
IP91_RSS_NoFragments_Firmicutes_UniRef90_NoFragments_RSS_Firmicutes_Minlen140_AS11
11/10 07:30 PM
26174 IP91_RSS_NoFragments Firmicutes UniRef90_NoFragments_RSS_Firmicutes
11/8 12:35 PM
IP91_RSS_NoFragments_Firmicutes_UniRef90_NoFragments_RSS_Firmicutes_Minlen140_AS11
11/10 07:30 PM
IP91_RSS_NoFragments_Firmicutes_UniRef90_NoFragments_RSS_Firmicutes_Minlen140_AS11
11/10 07:30 PM
26175 IP91_RSS_NoFragments Proteobacteria UniRef90_NoFragments_RSS_Proteobacteria
11/8 07:10 PM
IP91_RSS_NoFragments_Proteobacteria_UniRef90_NoFragments_RSS_Proteobacteria_Minlen140_AS11
11/10 11:45 PM
IP91_RSS_NoFragments_Proteobacteria_UniRef90_NoFragments_RSS_Proteobacteria_Minlen140_AS11
11/10 11:45 PM
26175 IP91_RSS_NoFragments Proteobacteria UniRef90_NoFragments_RSS_Proteobacteria
11/8 07:10 PM
IP91_RSS_NoFragments_Proteobacteria_UniRef90_NoFragments_RSS_Proteobacteria_Minlen140_AS11
11/10 11:45 PM
IP91_RSS_NoFragments_Proteobacteria_UniRef90_NoFragments_RSS_Proteobacteria_Minlen140_AS11
11/10 11:45 PM
26176 IP91_RSS_NoFragments Archaea UniRef90_NoFragments_RSS_Archaea
11/8 10:40 AM
IP91_RSS_NoFragments_Archaea_UniRef90_NoFragments_RSS_Archaea_Minlen140_AS11
11/10 05:45 PM
IP91_RSS_NoFragments_Archaea_UniRef90_NoFragments_RSS_Archaea_Minlen140_AS11
11/10 05:45 PM
26176 IP91_RSS_NoFragments Archaea UniRef90_NoFragments_RSS_Archaea
11/8 10:40 AM
IP91_RSS_NoFragments_Archaea_UniRef90_NoFragments_RSS_Archaea_Minlen140_AS11
11/10 05:45 PM
IP91_RSS_NoFragments_Archaea_UniRef90_NoFragments_RSS_Archaea_Minlen140_AS11
11/10 05:45 PM
26177 IP91_RSS_NoFragments Eukaryota UniRef90_NoFragments_RSS_Fungi
11/8 09:35 AM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_Fungi_Minlen140_AS11
11/8 09:50 AM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_Fungi_Minlen140_AS11
11/8 09:50 AM
26177 IP91_RSS_NoFragments Eukaryota UniRef90_NoFragments_RSS_Fungi
11/8 09:35 AM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_Fungi_Minlen140_AS11
11/8 09:50 AM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_Fungi_Minlen140_AS11
11/8 09:50 AM
26191 IP91_RSS_NoFragments Alphaproteobacteria UniRef90_NoFragments_RSS_Alphaproteobacteria
11/10 06:50 PM
IP91_RSS_NoFragments_Alphaproteobacteria_UniRef90_NoFragments_RSS_Alphaproteobacteria_Minlen140_AS11
11/10 07:40 PM
IP91_RSS_NoFragments_Alphaproteobacteria_UniRef90_NoFragments_RSS_Alphaproteobacteria_Minlen140_AS11
11/10 07:40 PM
26191 IP91_RSS_NoFragments Alphaproteobacteria UniRef90_NoFragments_RSS_Alphaproteobacteria
11/10 06:50 PM
IP91_RSS_NoFragments_Alphaproteobacteria_UniRef90_NoFragments_RSS_Alphaproteobacteria_Minlen140_AS11
11/10 07:40 PM
IP91_RSS_NoFragments_Alphaproteobacteria_UniRef90_NoFragments_RSS_Alphaproteobacteria_Minlen140_AS11
11/10 07:40 PM
26192 IP91_RSS_NoFragments Betaproteobacteria UniRef90_NoFragments_RSS_Betaproteobacteria
11/10 05:45 PM
IP91_RSS_NoFragments_Betaproteobacteria_UniRef90_NoFragments_RSS_Betaproteobacteria_Minlen140_AS11
11/10 06:20 PM
IP91_RSS_NoFragments_Betaproteobacteria_UniRef90_NoFragments_RSS_Betaproteobacteria_Minlen140_AS11
11/10 06:20 PM
26192 IP91_RSS_NoFragments Betaproteobacteria UniRef90_NoFragments_RSS_Betaproteobacteria
11/10 05:45 PM
IP91_RSS_NoFragments_Betaproteobacteria_UniRef90_NoFragments_RSS_Betaproteobacteria_Minlen140_AS11
11/10 06:20 PM
IP91_RSS_NoFragments_Betaproteobacteria_UniRef90_NoFragments_RSS_Betaproteobacteria_Minlen140_AS11
11/10 06:20 PM
26194 IP91_RSS_NoFragments Deltaproteobacteria UniRef90_NoFragments_RSS_Deltaproteobacteria
11/10 06:30 PM
IP91_RSS_NoFragments_Deltaproteobacteria_UniRef90_NoFragments_RSS_Deltaproteobacteria_Minlen140_AS11
11/10 07:05 PM
IP91_RSS_NoFragments_Deltaproteobacteria_UniRef90_NoFragments_RSS_Deltaproteobacteria_Minlen140_AS11
11/10 07:05 PM
26194 IP91_RSS_NoFragments Deltaproteobacteria UniRef90_NoFragments_RSS_Deltaproteobacteria
11/10 06:30 PM
IP91_RSS_NoFragments_Deltaproteobacteria_UniRef90_NoFragments_RSS_Deltaproteobacteria_Minlen140_AS11
11/10 07:05 PM
IP91_RSS_NoFragments_Deltaproteobacteria_UniRef90_NoFragments_RSS_Deltaproteobacteria_Minlen140_AS11
11/10 07:05 PM
26195 IP91_RSS_NoFragments Epsilonproteobacteria UniRef90_NoFragments_RSS_Epsilonproteobacteria
11/10 05:30 PM
IP91_RSS_NoFragments_Epsilonproteobacteria_UniRef90_NoFragments_RSS_Epsilonproteobacteria_Minlen140_AS11
11/10 06:20 PM
IP91_RSS_NoFragments_Epsilonproteobacteria_UniRef90_NoFragments_RSS_Epsilonproteobacteria_Minlen140_AS11
11/10 06:20 PM
26195 IP91_RSS_NoFragments Epsilonproteobacteria UniRef90_NoFragments_RSS_Epsilonproteobacteria
11/10 05:30 PM
IP91_RSS_NoFragments_Epsilonproteobacteria_UniRef90_NoFragments_RSS_Epsilonproteobacteria_Minlen140_AS11
11/10 06:20 PM
IP91_RSS_NoFragments_Epsilonproteobacteria_UniRef90_NoFragments_RSS_Epsilonproteobacteria_Minlen140_AS11
11/10 06:20 PM
26219 IP91_RSS_NoFragments Eukaryota UniRef90_NoFragments_RSS_EukaryotaNoFungi
11/11 02:05 PM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_EukaryotaNoFungi_Minlen140_AS11
11/11 02:45 PM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_EukaryotaNoFungi_Minlen140_AS11
11/11 02:45 PM
26219 IP91_RSS_NoFragments Eukaryota UniRef90_NoFragments_RSS_EukaryotaNoFungi
11/11 02:05 PM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_EukaryotaNoFungi_Minlen140_AS11
11/11 02:45 PM
IP91_RSS_NoFragments_Eukaryota_UniRef90_NoFragments_RSS_EukaryotaNoFungi_Minlen140_AS11
11/11 02:45 PM

RSS: Families option, Filter by Taxonomy in the Analysis Step

ID Job Name Recent Activity
26852 IP91_RSS_UniRef90_NoFragments
1/1 02:46 PM
IP91_RSS_UniRef90_NoFragments_Actinobacteria_Minlen140_AS11
;
1/19 02:25 PM
IP91_RSS_UniRef90_NoFragments_Bacteroidetes_Minlen140_AS11
;
1/19 02:28 PM
IP91_RSS_UniRef90_NoFragments_Firmicutes_Minlen140_AS11
;
1/19 03:38 PM
IP91_RSS_UniRef90_NoFragments_Proteobacteria_Minlen140_AS11
;
1/19 05:23 PM
IP91_RSS_UniRef90_NoFragments_Archaea_Minlen140_AS11
;
1/19 02:25 PM
IP91_RSS_UniRef90_NoFragments_Fungi_Minlen140_AS11
;
1/19 01:52 PM
IP91_RSS_UniRef90_NoFragments_EnoF_Minlen140_AS11
;
1/19 02:00 PM
IP91_RSS_UniRef90_NoFragments_Alphaproteobacteria_Minlen140_AS11
;
1/19 02:41 PM
IP91_RSS_UniRef90_NoFragments_Betaproteobacteria_Minlen140_AS11
;
1/19 02:02 PM
IP91_RSS_UniRef90_NoFragments_Gammaproteobacteria_Minlen140_AS11
;
1/19 02:30 PM
IP91_RSS_UniRef90_NoFragments_Deltaproteobacteria_Minlen140_AS11
;
1/19 02:15 PM
IP91_RSS_UniRef90_NoFragments_Epsilonproteobacteria_Minlen140_AS11
;
1/19 01:56 PM
IP91_RSS_UniRef90_NoFragments_Minlen140_AS11
1/21 07:26 PM

RSS: Families option, Filter by Taxonomy in the Generate Step

ID Job Name Recent Activity
26156 IP91_RSS_UniRef90_NoFragments_Actinobacteria
11/7 03:25 PM
IP91_RSS_UniRef90_NoFragments_Actinobacteria_Minlen140_AS11
11/8 10:15 AM
IP91_RSS_UniRef90_NoFragments_Actinobacteria_Minlen140_AS11
11/8 10:15 AM
26156 IP91_RSS_UniRef90_NoFragments_Actinobacteria
11/7 03:25 PM
IP91_RSS_UniRef90_NoFragments_Actinobacteria_Minlen140_AS11
11/8 10:15 AM
IP91_RSS_UniRef90_NoFragments_Actinobacteria_Minlen140_AS11
11/8 10:15 AM
26157 IP91_RSS_UniRef90_NoFragments_Bacteroidetes
11/7 03:15 PM
IP91_RSS_UniRef90_NoFragments_Bacteroidetes_Minlen140_AS11
11/8 10:15 AM
IP91_RSS_UniRef90_NoFragments_Bacteroidetes_Minlen140_AS11
11/8 10:15 AM
26157 IP91_RSS_UniRef90_NoFragments_Bacteroidetes
11/7 03:15 PM
IP91_RSS_UniRef90_NoFragments_Bacteroidetes_Minlen140_AS11
11/8 10:15 AM
IP91_RSS_UniRef90_NoFragments_Bacteroidetes_Minlen140_AS11
11/8 10:15 AM
26158 IP91_RSS_UniRef90_NoFragments_Firmicutes
11/7 04:40 PM
IP91_RSS_UniRef90_NoFragments_Firmicutes_Minlen140_AS11
11/10 07:20 PM
IP91_RSS_UniRef90_NoFragments_Firmicutes_Minlen140_AS11
11/10 07:20 PM
26158 IP91_RSS_UniRef90_NoFragments_Firmicutes
11/7 04:40 PM
IP91_RSS_UniRef90_NoFragments_Firmicutes_Minlen140_AS11
11/10 07:20 PM
IP91_RSS_UniRef90_NoFragments_Firmicutes_Minlen140_AS11
11/10 07:20 PM
26160 IP91_RSS_UniRef90_NoFragments_Fungi
11/7 02:00 PM
IP91_RSS_UniRef90_NoFragments_Fungi_Minlen140_AS11
11/8 09:45 AM
IP91_RSS_UniRef90_NoFragments_Fungi_Minlen140_AS11
11/8 09:45 AM
26160 IP91_RSS_UniRef90_NoFragments_Fungi
11/7 02:00 PM
IP91_RSS_UniRef90_NoFragments_Fungi_Minlen140_AS11
11/8 09:45 AM
IP91_RSS_UniRef90_NoFragments_Fungi_Minlen140_AS11
11/8 09:45 AM
26161 IP91_RSS_UniRef90_NoFragments_Archaea
11/7 03:10 PM
IP91_RSS_UniRef90_NoFragments_Archaea_Minlen140_AS11
11/8 10:25 AM
IP91_RSS_UniRef90_NoFragments_Archaea_Minlen140_AS11
11/8 10:25 AM
26161 IP91_RSS_UniRef90_NoFragments_Archaea
11/7 03:10 PM
IP91_RSS_UniRef90_NoFragments_Archaea_Minlen140_AS11
11/8 10:25 AM
IP91_RSS_UniRef90_NoFragments_Archaea_Minlen140_AS11
11/8 10:25 AM
27091 IP91_RSS_UniRef90_NoFragments_Alphaproteobacteria
1/19 11:21 AM
IP91_RSS_UniRef90_NoFragments_Alphaproteobacteria_Minlen140_AS11
1/20 06:03 AM
27092 IP91_RSS_UniRef90_NoFragments_Betaproteobacteria
1/19 10:33 AM
IP91_RSS_UniRef90_NoFragments_Betaproteobacteria_Minlen140_AS11
1/20 05:15 AM
27093 IP91_RSS_UniRef90_NoFragments_Gammaproteobacteria
1/19 11:13 AM
IP91_RSS_UniRef90_NoFragments_Gammaproteobacteria_Minlen140_AS11
1/20 05:51 AM
27094 IP91_RSS_UniRef90_NoFragments_Deltaproteobacteria
1/19 11:01 AM
IP91_RSS_UniRef90_NoFragments_Deltaproteobacteria_Minlen140_AS11
1/20 05:36 AM
27095 IP91_RSS_UniRef90_NoFragments_Epsilonproteobacteria
1/19 10:20 AM
IP91_RSS_UniRef90_NoFragments_Epsilonproteobacteria_Minlen140_AS11
1/20 05:09 AM

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