EFI - Training Resources: From The Bench
This web resource is supported by a Research Resource from the National Institute of General Medical Sciences (R24GM141196-01).
The tools are available without charge or license to both academic and commercial users.
EFI Genomic Enzymology Tools
EFI-EST
EFI-GNT
EFI-CGFP
A "From The Bench" article was published in Biochemistry in 2019 describing the use of the EFI web tools with an analysis of the glycyl radical enzyme superfamily (GRE; IPR004184). PDF files of the article and the Supplementary Information that includes a detailed description of the tools are available for download.
Please use the following to cite the EFI tools:
Rémi Zallot, Nils Oberg, and John A. Gerlt,
The EFI Web Resource for Genomic Enzymology Tools: Leveraging Protein, Genome, and Metagenome
Databases to Discover Novel Enzymes and Metabolic Pathways.
Biochemistry 2019 58 (41), 4169-4182.
https://doi.org/10.1021/acs.biochem.9b00735
Download the paper in PDF format.
Download the supplementary methods (201 pages).
Download the supplementary figures and tables (25 pages).
We also provide access to the EFI-EST, EFI-GNT and EFI-CGFP jobs that were generated in the analysis of the GRE superfamily.
EST Jobs
GNT Job
| ID | Filename | Date Completed |
|---|---|---|
| 10442 | 29536_IPR004184_IP74_UniRef90_Minlen650_AS240_full_ssn.xgmml |
6/21 02:10 AM |
| 10442 | 29536_IPR004184_IP74_UniRef90_Minlen650_AS240_full_ssn.xgmml |
6/21 02:10 AM |
CGFP Job
| ID | Filename | Date Completed |
|---|---|---|
| 2206 | 29546_29536_IPR004184_IP74_UniRef90_Minlen650_AS240_full_ssn_coloredssn.xgmml |
6/21 12:07 AM |
| PR004184_IP74_UniRef90_Minlen650_AS240_HMP |
6/22 06:47 PM |
