EFI - Chemically-Guided Functional Profiling

This web resource is supported by a Research Resource from the National Institute of General Medical Sciences (R24GM141196-01).

The tools are available without charge or license to both academic and commercial users.

RadicalSAM.org, our resource for investigating sequence-function space in the radical SAM superfamily, has been updated with sequences from the UniProt Release 2024_01 and InterPro Release 98 databases (January 24, 2024) !!

https://radicalsam.org

Markers Computation Results

Submitted SSN: 27071_26147_IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240_full_ssn_coloredssn

Submission Summary
Identified Markers

Submission Summary Table

Input filename	27071_26147_IP91_IPR004184_NoFragments_Actinobacteria_UniRef90_NoFragments_IPR004184_Actinobacteria_Minlen650_AS240_full_ssn_coloredssn.zip
Identify ID	835
Minimum sequence length	650
Identify search type	DIAMOND
Reference database	UNIREF90
CD-HIT identity for ShortBRED family definition	85

Markers that uniquely define clusters in the submitted SSN have been identified.

Files detailing the identities of the markers and which sequences they represent are available for download.

SSN With Marker Identification Results

The SSN submitted has been edited to include the marker ID and type and the number of markers that were identified.

	File	Size
	SSN with identify results (ZIP)

CGFP Family and Marker Data

The CD-HIT ShortBRED families by cluster file contains mappings of ShortBRED families to SSN cluster number as well as a color that is assigned to each unique ShortBRED family. The ShortBRED marker data file lists the markers that were identified.

	File	Size
	CD-HIT ShortBRED families by cluster
	ShortBRED marker data

Submission is currently disabled due to site maintenance. Submission is currently disabled due to site maintenance.

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