EFI - Enzyme Similarity Tool

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The tools are available without charge or license to both academic and commercial users.
RadicalSAM.org, our resource for investigating sequence-function space in the radical SAM superfamily, has been updated with sequences from the UniProt Release 2024_01 and InterPro Release 98 databases (January 24, 2024) !!

https://radicalsam.org

Dataset Completed

Submission Name: IP91_IPR004184_NoFragments Actinobacteria UniRef90_NoFragments_IPR004184_Actinobacteria

A minimum sequence similarity threshold that specifies the sequence pairs connected by edges is needed to generate the SSN. This threshold also determines the segregation of proteins into clusters. The threshold is applied to the edges in the SSN using the alignment score, an edge node attribute that is a measure of the similarity between sequence pairs.

The parameters for generating the initial dataset are summarized in the table.

Job Number26147
Database VersionUniProt: 2022-04 / InterPro: 91
Input OptionAccession IDs (Option D)
Job NameIP91_IPR004184_NoFragments Actinobacteria UniRef90_NoFragments_IPR004184_Actinobacteria
Input Sequence SourceUniRef90
E-Value for SSN Edge Calculation5
No matches file
Number of IDs in Uploaded File525 (525 UniProt ID matches and 0 unmatched)
Taxonomy CategoriesPhylum: actinobacteria
Family FilterIPR004184
Exclude FragmentsYes
Total Number of Sequences in Dataset522
Total Number of Edges129,212
Number of Unique Sequences522
Convergence Ratio?0.950
Portions of these data are derived from the Universal Protein Resource (UniProt) databases.

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