EFI - Taxonomy Tool

This web resource is supported by a Research Resource from the National Institute of General Medical Sciences (R24GM141196-01).

The tools are available without charge or license to both academic and commercial users.

RadicalSAM.org, our resource for investigating sequence-function space in the radical SAM superfamily, has been updated with sequences from the UniProt Release 2024_01 and InterPro Release 98 databases (January 24, 2024) !!

https://radicalsam.org

Dataset Completed

The parameters for generating the initial dataset are summarized in the table.

Job Number	26116
Time Started -- Finished	11/6 06:25 PM -- 11/6 06:55 PM
Database Version	UniProt: 2022-04 / InterPro: 91
Input Option	Families (Option B)
Job Name	IP91_IPR004184_All
E-Value for SSN Edge Calculation
Pfam / InterPro Family	IPR004184
Number of IDs in Pfam / InterPro Family	25,513
Exclude Fragments	No
Total Number of Sequences in Dataset	25,513

The taxonomy distribution for the UniProt IDs identified as members of the input list of families is displayed.

The UniRef90 and UniRef50 clusters containing the UniProt IDs in the sunburst are identified using the lookup table provided by UniProt/UniRef. These UniRef90 and UniRef50 clusters may contain UniProt IDs from other families; in addition, the UniRef90 and UniRef50 clusters at a selected taxonomy category may contain UniProt IDs from other categories. This results from conflation of UniProt IDs in UniRef90 and UniRef50 clusters that share ≥90% and ≥50% sequence identity, respectively.

The numbers of UniProt IDs, UniRef90 cluster IDs, and UniRef50 cluster IDs for the selected category are displayed.

The sunburst is interactive, providing the ability to zoom to a selected taxonomy category by clicking on that category; clicking on the center circle will return the display to the next highest rank.

Number of sequences at each length - UniProt

Number of sequences at each length - UniRef90

Number of sequences at each length - UniRef50

Portions of these data are derived from the Universal Protein Resource (UniProt) databases.

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