EFI - Chemically-Guided Functional Profiling

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RadicalSAM.org, our resource for investigating sequence-function space in the radical SAM superfamily, has been updated with sequences from the UniProt Release 2024_01 and InterPro Release 98 databases (January 24, 2024) !!

https://radicalsam.org

Markers Computation Results

Submitted SSN: 29546_29536_IPR004184_IP74_UniRef90_Minlen650_AS240_full_ssn_coloredssn

Submission Summary
Identified Markers

Submission Summary Table

Input filename	29546_29536_IPR004184_IP74_UniRef90_Minlen650_AS240_full_ssn_coloredssn.xgmml
Identify ID	2206
Minimum sequence length	650
Identify search type	DIAMOND
Reference database	UNIREF90
CD-HIT identity for ShortBRED family definition	85
Number of SSN clusters	200
Number of SSN singletons	196
SSN sequence source	UniRef90
Number of SSN (meta)nodes	4,178
Number of accession IDs in SSN	16,274
Number of unique sequences in SSN	12,762
Number of CD-HIT ShortBRED families	3,203
Number of markers	16,347

Markers that uniquely define clusters in the submitted SSN have been identified.

Files detailing the identities of the markers and which sequences they represent are available for download.

SSN With Marker Identification Results

The SSN submitted has been edited to include the marker ID and type and the number of markers that were identified.

	File	Size
	SSN with identify results (ZIP)	27 MB

CGFP Family and Marker Data

The CD-HIT ShortBRED families by cluster file contains mappings of ShortBRED families to SSN cluster number as well as a color that is assigned to each unique ShortBRED family. The ShortBRED marker data file lists the markers that were identified.

	File	Size
	CD-HIT ShortBRED families by cluster	<1 MB
	ShortBRED marker data	1 MB

Submission is currently disabled due to site maintenance. Submission is currently disabled due to site maintenance.

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