The parameters used for the initial submission and the finalization are summarized in the table below.
|Analysis Job Number||35890|
|Total Number of Sequences After Length Filtering||4,178|
|EST Job Number||29536 (Original Dataset)|
|Database Version||UniProt: 2019-04 / InterPro: 74|
|Input Option||Families (Option B)|
|Pfam / InterPro Family||IPR004184|
|Number of IDs in Pfam / InterPro Family||20,232|
|Number of Cluster IDs in UniRef90 Family||6,020|
|Total Number of Sequences in Dataset||6,020|
|Total Number of Edges||13,553,197|
The panels below provide files for full and representative node SSNs for download with the indicated numbers of nodes and edges. As an approximate guide, SSNs with ~2M edges can be opened with 16 GB RAM, ~4M edges can be opened with 32 GB RAM, ~8M edges can be opened with 64 GB RAM, ~15M edges can be opened with 128 GB RAM, and ~30M edges can be opened with 256 GB RAM.
Each node in the network represents a single protein sequence. Large files (>500MB) may not open in Cytoscape.
|# Nodes||# Edges||File Size (MB)|
In representative node (RepNode) networks, each node in the network represents a collection of proteins grouped according to percent identity. For example, for a 75% identity RepNode network, all connected sequences that share 75% or more identity are grouped into a single node (meta node). Sequences are collapsed together to reduce the overall number of nodes, making for less complicated networks easier to load in Cytoscape.
The cluster organization is not changed, and the clustering of sequences remains identical to the full network.
|% ID||# Nodes||# Edges||File Size (MB)|
Portions of these data are derived from the Universal Protein Resource (UniProt) databases.
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