The parameters for computing the GNN and associated files are summarized in the table.
Uploaded Filename | 26123_IP91_IPR004184_UniRef90_NoFragments_Archaea_Minlen650_AS240_SA_full_ssn.xgmml.zip |
Neighborhood Size | 10 |
Input % Co-Occurrence | 20 |
Each cluster in the submitted SSN has been identified and assigned a unique number and color. Node attributes for "Neighbor Pfam Families" and "Neighbor InterPro Families" have been added.
# Nodes | # Edges | File Size (Zipped MB) | |
---|---|---|---|
262 | 2,074 | <1 |
GNNs provide a representation of the neighboring Pfam families for each SSN cluster identified in the colored SSN. To be displayed, neighboring Pfams families must be detected in the specified window and at a co-occurrence frequency higher than the specified minimum.
Each hub-node in the network represents a SSN cluster. The spoke nodes represent Pfam families that have been identified as neighbors of the sequences from the center hub.
File Size (Zipped MB) | |
---|---|
<1 |
Each hub-node in the network represents a Pfam family identified as a neighbor. The spokes nodes represent SSN clusters that identified the Pfam family from the center hub.
File Size (Zipped MB) | |
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<1 |
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